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学科主题: 生物科学::普通生物学
题名: Sphingomonas prati sp nov., isolated from alpine meadow soil
作者: Manandhar, P (Manandhar, Pooja)1, 2; Zhang, GX (Zhang, Gengxin)1; Hu, YL (Hu, Yilun)1, 2; Lama, A (Lama, Arun)3; Gao, F (Gao, Feng)1, 4; Gu, ZQ (Gu, Zhengquan)2
通讯作者: Zhang, GX
关键词: GENUS SPHINGOMONAS ; EMENDED DESCRIPTION ; RENATURATION RATES ; DNA HYBRIDIZATION ; DUMP SITE ; BACTERIUM ; SEQUENCE ; NOVOSPHINGOBIUM ; SPHINGOPYXIS ; SPHINGOBIUM
刊名: INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
发表日期: 2016
DOI: 10.1099/ijsem.0.001346
卷: 66, 期:0, 页:4269-4275
收录类别: SCI
合作性质: 国内
文章类型: Article
部门归属: 生态
英文摘要: A Gram-staining-negative, non-motile, orange-coloured and rod-shaped aerobic bacterium, designated W18RD(T), was isolated from the alpine meadow soil of the Tibetan plateau. Phylogenetic analysis based on 16S rRNA gene sequences positioned strain W18RD(T) as a representative of a novel species under the genus Sphingomonas which was most closely related to Sphingomonas fennica DSM 13665(T) with a sequence similarity level of 97.14 %. Meanwhile, it also had a high level of sequence similarity with Sphingomonas laterariae DSM 25432(T) (96.51 %), Sphingomonas haloaromaticamans CGMCC 1.10206(T) (96.43 %) and Sphingomonas formosensis DSM 24164(T) (96.26 %). The G+C content of the genomic DNA of the type strain W18RD(T) was 66.4mol%. DNA-DNA relatedness for the type strain W18RD(T) with respect to its closest phylogenetic relative Sphingomonas. fennica DSM 13665(T) was 21.54 +/- 1.2 %. Major cellular fatty acids in strain W18RD(T) were C-16 (:) (1)omega 7c and/or C-16 (:) (1)omega 6c (48.12 %), C-18 (:) (1)omega 7c and/or C-18 (:) (1)omega 6c (21.98 %) and C-14 (:) (0) 2-OH (14.93 %), with ubiquinone-10 (Q-10) as the predominant respiratory quinone. The polar lipid profile of the strain consisted of phosphatidylethanolamine, phosphatidylglycerol, sphingoglycolipid, phosphatidylcholine, diphosphatidylglycerol and two unknown lipids. Based on the evidence from a combination of phenotypic, taxonomic and phylogenetic analyses, strain W18RD(T) represents a novel species of the genus Sphingomonas, for which the name Sphingomonas prati sp. nov. is proposed. The type strain is W18RD(T) (=CGMCC 1.15645(T)= DSM 103336(T)).
语种: 英语
WOS记录号: WOS:000386871600080
Citation statistics:
内容类型: 期刊论文
URI标识: http://ir.itpcas.ac.cn/handle/131C11/7546
Appears in Collections:图书馆_期刊论文

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作者单位: 1.Chinese Acad Sci, Inst Tibetan Plateau Res, Key Lab Alpine Ecol & Biodivers, Beijing, Peoples R China
2.Univ Chinese Acad Sci, Beijing, Peoples R China.
3.Tsinghua Univ, Sch Environm, Beijing, Peoples R China
4.Hebei Univ Engn, Handan, Peoples R China

Recommended Citation:
Manandhar, P ,Zhang, GX ,Hu, YL ,et al. Sphingomonas prati sp nov., isolated from alpine meadow soil[J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY,2016,66(0):4269-4275.
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