| Sphingomonas prati sp nov., isolated from alpine meadow soil | |
| Manandhar, P (Manandhar, Pooja)1,2; Zhang, GX (Zhang, Gengxin)1; Hu, YL (Hu, Yilun)1,2; Lama, A (Lama, Arun)3; Gao, F (Gao, Feng)1,4; Gu, ZQ (Gu, Zhengquan)2; Zhang, GX | |
| Source Publication | INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
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| 2016 | |
| Volume | 66Issue:0Pages:4269-4275 |
| DOI | 10.1099/ijsem.0.001346 |
| Abstract | A Gram-staining-negative, non-motile, orange-coloured and rod-shaped aerobic bacterium, designated W18RD(T), was isolated from the alpine meadow soil of the Tibetan plateau. Phylogenetic analysis based on 16S rRNA gene sequences positioned strain W18RD(T) as a representative of a novel species under the genus Sphingomonas which was most closely related to Sphingomonas fennica DSM 13665(T) with a sequence similarity level of 97.14 %. Meanwhile, it also had a high level of sequence similarity with Sphingomonas laterariae DSM 25432(T) (96.51 %), Sphingomonas haloaromaticamans CGMCC 1.10206(T) (96.43 %) and Sphingomonas formosensis DSM 24164(T) (96.26 %). The G+C content of the genomic DNA of the type strain W18RD(T) was 66.4mol%. DNA-DNA relatedness for the type strain W18RD(T) with respect to its closest phylogenetic relative Sphingomonas. fennica DSM 13665(T) was 21.54 +/- 1.2 %. Major cellular fatty acids in strain W18RD(T) were C-16 (:) (1)omega 7c and/or C-16 (:) (1)omega 6c (48.12 %), C-18 (:) (1)omega 7c and/or C-18 (:) (1)omega 6c (21.98 %) and C-14 (:) (0) 2-OH (14.93 %), with ubiquinone-10 (Q-10) as the predominant respiratory quinone. The polar lipid profile of the strain consisted of phosphatidylethanolamine, phosphatidylglycerol, sphingoglycolipid, phosphatidylcholine, diphosphatidylglycerol and two unknown lipids. Based on the evidence from a combination of phenotypic, taxonomic and phylogenetic analyses, strain W18RD(T) represents a novel species of the genus Sphingomonas, for which the name Sphingomonas prati sp. nov. is proposed. The type strain is W18RD(T) (=CGMCC 1.15645(T)= DSM 103336(T)). |
| Subject Area | 普通生物学 |
| WOS ID | WOS:000386871600080 |
| Language | 英语 |
| Indexed By | SCI |
| Keyword | Genus Sphingomonas Emended Description Renaturation Rates Dna Hybridization Dump Site Bacterium Sequence Novosphingobium Sphingopyxis Sphingobium |
| Cooperation Status | 国内 |
| Department | 生态 |
| Subtype | Article |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | http://ir.itpcas.ac.cn/handle/131C11/7546 |
| Collection | 图书馆 |
| Corresponding Author | Zhang, GX |
| Affiliation | 1.Chinese Acad Sci, Inst Tibetan Plateau Res, Key Lab Alpine Ecol & Biodivers, Beijing, Peoples R China 2.Univ Chinese Acad Sci, Beijing, Peoples R China. 3.Tsinghua Univ, Sch Environm, Beijing, Peoples R China 4.Hebei Univ Engn, Handan, Peoples R China |
| Recommended Citation GB/T 7714 | Manandhar, P ,Zhang, GX ,Hu, YL ,et al. Sphingomonas prati sp nov., isolated from alpine meadow soil[J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY,2016,66(0):4269-4275. |
| APA | Manandhar, P .,Zhang, GX .,Hu, YL .,Lama, A .,Gao, F .,...&Zhang, GX.(2016).Sphingomonas prati sp nov., isolated from alpine meadow soil.INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY,66(0),4269-4275. |
| MLA | Manandhar, P ,et al."Sphingomonas prati sp nov., isolated from alpine meadow soil".INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 66.0(2016):4269-4275. |
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| V.66 4269-4275 2016.（176KB） | 期刊论文 | 作者接受稿 | 开放获取 | CC BY-NC-SA | View Application Full Text | |
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